autods_pet.ops.save_masks

Save raw and refined segmentation masks to disk as NIfTI files.

autods_pet.ops.save_masks.save_raw_masks(whole_seg, seg_dir)

Extract individual binary masks from whole_seg and save as NIfTI.

Parameters:

• whole_seg (Any) – The TotalSegmentator multilabel segmentation.

• seg_dir (Path) – Patient’s segmentation directory.

Returns:

Paths to the saved mask files.

Return type:

list[Path]

autods_pet.ops.save_masks.save_refined_masks(results, seg_dir)

Save refined ROI masks from extraction results.

Parameters:

• results (dict[str, Any]) – The dict returned by extract_rois(), mapping ROI display names to ROIResult.

• seg_dir (Path) – Patient’s segmentation directory.

Returns:

Paths to the saved mask files.

Return type:

list[Path]