API Reference

• autods_pet.pipeline
  • extract_new_targets_only()
  • generate_metadata_template()
  • convert_images()
  • normalize_pet()
  • register_pet()
  • segment_ct()
  • extract_rois()
  • score_deauville()
  • write_patient_suv_csv()
  • write_patient_deauville_csv()
  • save_batch_csv()
  • DeauvillePipeline
• autods_pet.patient
  • resolve_paths()
  • PatientCase
• autods_pet.config
  • default_config()
  • load_config()
  • parse_stat()
  • get_roi_config()
  • get_all_targets()
  • ValidationIssue
  • ConfigValidator
  • create_default_config()
  • resolve_output_dir()
• autods_pet.deauville
  • assign_ds()
• autods_pet.results
  • ROIResult
  • DeauvilleResult
• autods_pet.io
  • read_patient_list()
  • save_dataframe()
• autods_pet.labels
• autods_pet.manifest
  • collect_environment()
  • write_manifest()
• autods_pet.imaging
  • compute_suvbw()
  • decay_dose()
  • dicom_series_to_nifti()
  • effective_dose()
  • extract_ct_tags()
  • extract_patient_weight()
  • extract_pet_tags()
  • find_dicom_files()
  • find_series_by_modality()
  • parse_dicom_date()
  • parse_dicom_time()
  • resolve_patient_folder()
  • rigid_register_pet_to_ct()
  • run_totalsegmentator()
  • seconds_between()
  • autods_pet.imaging.dicom
  • autods_pet.imaging.normalization
  • autods_pet.imaging.registration
  • autods_pet.imaging.segmentation
  • autods_pet.imaging.geometry
• autods_pet.roi
  • AortaMBP
  • BrainROI
  • LiverROI
  • LongBonesROI
  • LumbarVB
  • TargetROI
  • autods_pet.roi.aorta_mbp
  • autods_pet.roi.brain
  • autods_pet.roi.liver
  • autods_pet.roi.lumbar_vb
  • autods_pet.roi.long_bones
  • autods_pet.roi.target_roi
• autods_pet.ops
  • compute_stats()
  • count_voxels()
  • fill_holes()
  • keep_largest_component()
  • label_mask()
  • label_union()
  • mask_volume_mm3()
  • max_in_mask()
  • mean_in_mask()
  • min_in_mask()
  • percentile_in_mask()
  • shrinkage_report()
  • voxelwise_median()
  • autods_pet.ops.stats
  • autods_pet.ops.masks
  • autods_pet.ops.morphology
  • autods_pet.ops.save_masks
  • autods_pet.ops.dicom_seg
  • autods_pet.ops.mask_discovery